Fungal Genome Extraction and Sequencing
Corresponding Organization : Chiang Mai University
Other organizations : Zhongkai University of Agriculture and Engineering, Mae Fah Luang University, University of Mauritius, Kunming University of Science and Technology, University of Electronic Science and Technology of China
Variable analysis
- Primer pairs used for amplification (LR0R/LR5, NS1/NS4, ITS5/ITS4, fRPB2-5F/fRPB2-7cR)
- Amplification of target DNA fragments (LSU, SSU, ITS, rpb2)
- Fungal mycelia scraped from colonies on PDA
- Total genomic DNA extracted using Biospin Fungus Genomic DNA Extraction Kit
- PCR thermal cycle program for amplification of LSU, SSU and ITS: 94 °C for 3 min, followed by 35 cycles of 94 °C for 30 s, 55 °C for 50 s, 72 °C for 90 s, and a final extension at 72 °C for 10 min
- PCR thermal cycle program for amplification of rpb2: 94 °C for 3 min, followed by 35 cycles of 94 °C for 30 s, 52 °C for 50 s, 72 °C for 90 s, and a final extension at 72 °C for 10 min
- PCR products checked on 1% agarose electrophoresis gels stained with Gel Red
- Sequencing reactions carried out by Shanghai Sangon Biological Engineering Technology and Services Co.
Annotations
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