Proteolysis and peptide isolation, acquisition of mass spectra by a 4800 MALDI TOF/TOF Proteomics Analyzer (AB SCIEX), and MS-based protein homology identification based on the TAIR genomic database [69] were performed as described in [39] (link). Experimental background proteins were subtracted based on approximately 40 TAP experiments on wild-type cultures and cultures expressing TAP-tagged mock GUS, RFP and GFP proteins [39] (link).
Tandem Affinity Purification of Arabidopsis Proteins
Proteolysis and peptide isolation, acquisition of mass spectra by a 4800 MALDI TOF/TOF Proteomics Analyzer (AB SCIEX), and MS-based protein homology identification based on the TAIR genomic database [69] were performed as described in [39] (link). Experimental background proteins were subtracted based on approximately 40 TAP experiments on wild-type cultures and cultures expressing TAP-tagged mock GUS, RFP and GFP proteins [39] (link).
Corresponding Organization : VIB-UGent Center for Plant Systems Biology
Other organizations : Utrecht University
Protocol cited in 1 other protocol
Variable analysis
- Entry clones containing the CaMV 35S promoter, the bait ORF and the GS-TAP tag
- Proteins identified by mass spectrometry-based homology identification
- Soluble protein fraction obtained by centrifuging twice at 36,900 g for 20 min at 4°C
- Approximately 40 TAP experiments on wild-type cultures and cultures expressing TAP-tagged mock GUS, RFP and GFP proteins
- Not specified
- Cultures expressing TAP-tagged mock GUS, RFP and GFP proteins
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