Macaque Ig Repertoire Sequencing
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Corresponding Organization :
Other organizations : Oregon National Primate Research Center, Oregon Health & Science University, Karolinska Institutet, Dartmouth College, Infectious Disease Research Institute, University of Alabama at Birmingham, University of Washington
Variable analysis
- Individualized IGHV germline gene database from macaque 25257 PBMCs produced from total mRNA
- IgDiscover used as an inference tool
- Libraries for high-throughput sequencing produced by 5' multiplex PCR
- Inferred IGHV alleles
- Heavy chain sequences of the 58 isolated mAbs assigned to the IGHV individualized database from macaque 25257 and to the IMGT's light chain database
- Analysis of SHM and CDR3 sequences
- IGHJ sequences identified using the IMGT rhesus macaque database
- Initial database utilized for the analysis obtained from genomic DNA sequencing with the addition of non-located (NL) alleles inferred from a larger set of macaques
- Not explicitly mentioned
- Not explicitly mentioned
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