Correlating Neuronal Connectivity and Function
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Corresponding Organization :
Other organizations : University College London
Protocol cited in 28 other protocols
Variable analysis
- Injection of the calcium-sensitive dye Oregon Green Bapta-1 AM into monocular V1 of anaesthetized C57Bl/6 mice between postnatal day 22 and 26
- Presentation of 8 different drifting square-wave gratings (0.035 cycles/degree, 2 cycles/s, 100% contrast) and natural movie sequences
- Responses of layer 2/3 neurons recorded using in vivo two-photon calcium imaging
- Spike trains inferred from calcium signals using a non-negative deconvolution method
- Preferred orientation and direction, orientation selectivity index (OSI), and direction selectivity index (DSI) calculated from Fourier-interpolated tuning curves
- Pearson's correlation coefficient used to obtain pair-wise response correlations (signal correlation and noise correlation)
- Presence of synaptic connections tested by evoking five spikes at 30-Hz in each cell, repeated for 30-90 times
- Connection probability and probability of finding uni- or bidirectionally connected pairs
- Anaesthetized C57Bl/6 mice between postnatal day 22 and 26
- Small volumes of fluorescent microspheres injected into the imaged region to facilitate identification of the region in the sliced brain
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