Third instar wandering larvae were dissected, fixed, antibody stained, imaged and analysed as described previously (West et al., 2015 (link)). All NMJ analysis was performed double-blind. Primary antibodies used were Cy3-Conjugated anti-HRP (Goat, 1:200, Jackson ImmunoResearch Labs Cat# 123–165-021, RRID:AB_2338959), anti-synaptotagmin (Rabbit, 1:2000, Syt-91, RRID:AB_2713991, (West et al., 2015 (link))) anti-polyubiquitinated proteins (Mouse, 1:2000, FK2, Enzo Life Sciences Cat# BML-PW8810–0500, RRID:AB_2051891), anti-RAB4 (Rabbit 1:100, Abcam Cat# ab78970, RRID:AB_2042753), anti-RAB5 (Rabbit, 1:500, Abcam Cat# ab31261, RRID:AB_882240) and anti-Spinster (Guinea Pig, 1:1000, RRID:AB_2833057, (Sweeney and Davis, 2002 (link))). Drosophila motor-neurons were labelled using GFP-tagged even-skipped (eve). Confocal microscopy was performed using a Zeiss LSM 880 on an Axio Observer.Z1 invert confocal microscope (Zeiss). Z-stacked projections of NMJs and VNCs were obtained using a Plan Neofluar 40×/0.75 NA oil objective. NMJ lengths were measured from stacked NMJ images using the NeuronJ plugin for ImageJ (National Institutes of Health) as described previously (West et al., 2015 (link); West et al., 2018 (link)).
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