Genomic Analysis of FJzz1 Variants
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Corresponding Organization :
Other organizations : Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai Jiao Tong University, Yangzhou University
Variable analysis
- FJzz1 variants (F20, F50, F100, F150, F200)
- Total RNA extraction
- CDNA synthesis
- Genomic sequences of FJzz1 variants
- Amino acid sequences of S proteins
- Full-length genome sequences of FJzz1 variants
- N-linked glycosylation sites in S proteins
- Phylogenetic tree based on S gene of FJzz1 strain and 60 reference strains
- RNeasy Mini Kit (Qiagen, Hilden, Germany) for RNA extraction
- Revert Aid First Stranded cDNA Synthesis Kit (Thermo Fisher Scientific, Waltham, MA, USA) for cDNA synthesis
- Clustal W method in MegAlign (DNAStar Lasergene) for sequence alignment
- NetNGlyc 1.0 Server for prediction and analysis of N-linked glycosylation sites
- Neighbor-joining method (NJ) using MEGA 7.0 for phylogenetic tree construction
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