Serum samples (50 μl) were prepared and then analyzed on an Oxford 800 MHz magnet equipped with an Avance III HD console and 3 mm TCI cryoprobe (Bruker BioSpin). Details of sample processing and the 1H NMR analysis have been published (Nilsson et al., 2020 (link)). Tentative annotations of peaks were made using ChenomX 8.3 (ChenomX Inc.) and the spectral data in the Human Metabolome Data Bank (Wishart et al., 2018 (link)). In total, 260 NMR features were detected in the serum samples. From these, 31 metabolites could be chemically and structurally annotated. In instances where multiple features represented a single metabolite, a strong well-separated peak was selected, or two or more peaks were summarized. All metabolite levels are reported as normalized NMR signals or as standardized values.
Metabolomic Profiling of Infant Serum
Serum samples (50 μl) were prepared and then analyzed on an Oxford 800 MHz magnet equipped with an Avance III HD console and 3 mm TCI cryoprobe (Bruker BioSpin). Details of sample processing and the 1H NMR analysis have been published (Nilsson et al., 2020 (link)). Tentative annotations of peaks were made using ChenomX 8.3 (ChenomX Inc.) and the spectral data in the Human Metabolome Data Bank (Wishart et al., 2018 (link)). In total, 260 NMR features were detected in the serum samples. From these, 31 metabolites could be chemically and structurally annotated. In instances where multiple features represented a single metabolite, a strong well-separated peak was selected, or two or more peaks were summarized. All metabolite levels are reported as normalized NMR signals or as standardized values.
Corresponding Organization : University of Gothenburg
Other organizations : Normandie Université, Science for Life Laboratory, KTH Royal Institute of Technology, Université de Rouen Normandie, Inserm, Lund University, Skåne University Hospital
Variable analysis
- Postnatal days (PND) 1, 7, 14, and 28
- Postmenstrual age (PMA) 32, 36, and 40 weeks
- Serum metabolite levels measured by NMR
- Blood samples allowed to clot at 4°C for 45 min to 2 h
- Centrifugation at room temperature at 1500 g for 10 min
- Serum stored at -20°C for up to 1 week before long-term storage at -80°C
- Samples subjected to 1 to 5 freeze-thaw cycles before NMR analysis
- Serum sample volume of 50 μl
- NMR analysis performed on an Oxford 800 MHz magnet equipped with an Avance III HD console and 3 mm TCI cryoprobe (Bruker BioSpin)
- No positive or negative controls explicitly mentioned
Annotations
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