Metabolite Profiling of Defatted Methanol Extract
Corresponding Organization : German University in Cairo
Other organizations : Jilin University, Uppsala University, Tanta University, Menoufia University, Jiangsu University, Kaohsiung Medical University, South Valley University
Protocol cited in 5 other protocols
Variable analysis
- Defatted methanol extract
- LC-MS-MS analysis
- Grace Vydac Everest Narrowbore C-18 column (100 mm × 2.1 mm i.d., 5 µm, 300 Å)
- LTQ Linear Ion Trap MS (Thermo Finnigan, San Jose, CA)
- Mass range of 100–2000 m/z
- 2 µL sample injection using an autosampler
- 35 min LC method: 5 min isocratic run using 5% acetonitrile (Acn) and 0.05% formic acid (FA), followed by a 25 min gradient to 95% AcN 0.05% FA, and 5 min of conditioning the column with 5% AcN and 0.05% FA
- Data processing and analysis using Xcalibur_3.1.6610
- Conversion of raw data files to mzXML format using MSConvert from the ProteoWizard suite
- Molecular network creation using the Global Natural Products Social Molecular Networking (GNPS) online workflow
Annotations
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