Publicly Available RNA-seq and scRNA-seq Data

RNA-seq data of hPSC-LOs and lung autopsy samples is publicly available on the GEO repository database under the accession number GSE155241. scRNA-seq data of hPSC-LOs is publicly available on the GEO repository database under the accession number GSE148113. scRNA-seq data of hPSC-COs are publicly available on the GEO repository database, accession number GSE147975. RNA-seq of hPSC-derived endocrine cells and liver organoids are available on the GEO repository database, accession number GSE151803.
Source Data behind Figs. 1c, d, g, k; 2i; 3a, e, k; 4a, c, g, i; Extended Data Figs 1d, e; 5a; 6a, c, d; 7a, c; 8a, c, e; 9a, d; 10a, c, are available within the manuscript files.

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Han Y., Duan X., Yang L., Nilsson-Payant B.E., Wang P., Duan F., Tang X., Yaron T.M., Zhang T., Uhl S., Bram Y., Richardson C., Zhu J., Zhao Z., Redmond D., Houghton S., Nguyen D.H., Xu D., Wang X., Jessurun J., Borczuk A., Huang Y., Johnson J.L., Liu Y., Xiang J., Wang H., Cantley L.C., tenOever B.R., Ho D.D., Pan F.C., Evans T., Chen H.J., Schwartz R.E, & Chen S. (2020). Identification of SARS-CoV-2 Inhibitors using Lung and Colonic Organoids. Nature, 589(7841), 270-275.

Publication 2020

Autopsy Endocrine cells Figs Liver Lung Organoids Rna seq Scrna seq

Corresponding Organization :

Other organizations : Cornell University, Icahn School of Medicine at Mount Sinai, Aaron Diamond AIDS Research Center, Columbia University, University of Chicago, University of Illinois at Chicago, Illinois College, State Key Laboratory of Oncogene and Related Genes, Shanghai Jiao Tong University

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Variable analysis

independent variables

HPSC-LOs
Lung autopsy samples
HPSC-COs
HPSC-derived endocrine cells
Liver organoids

dependent variables

RNA-seq data
ScRNA-seq data

control variables

Not explicitly mentioned

controls

Positive and negative controls not specified

Annotations

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