TMA slides were processed and antigen retrieved as described previously (33 (link)). For mouse IHC, tissue was either placed into OCT media for fresh frozen sections or fixed in 4% paraformaldehyde overnight. Fixed tissue was incubated in 70% ethanol overnight prior to paraffin embedding, and then cut for hematoxylin and eosin (H&E) staining. For p-Smad-2/3 on fresh frozen tumor sections, 5 μm sections were fixed with 4% paraformaldehyde followed by incubation with 3% H2O2. To minimize nonspecific staining, sections were incubated with the appropriate animal serum for 20 min at room temperature, followed by incubation with primary anti-p-Smad-2/3 antibody (EP823Y; Abcam) overnight at 4°C. Staining with secondary antibodies (Vectastain ABC Kit) was then performed before development using DAB substrate (Vector Labs SK-4100). The staining intensity of GARP and pSmad-2/3 was graded as follows with the sample identity blinded (0: negative; 1: faint; 2: moderate; 3: strong but less intense than 4; and 4: intense).
Immunohistochemical Analysis of GARP and pSmad-2/3
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Variable analysis
- Dilution of anti-hGARP antibody (from 1:250 to 1:60)
- Staining intensity of GARP
- Staining intensity of pSmad-2/3
- Tissue processing and antigen retrieval methods
- Fixation method (4% paraformaldehyde or paraffin embedding)
- Incubation with animal serum to minimize nonspecific staining
- Incubation with primary antibody (anti-p-Smad-2/3) overnight at 4°C
- Staining with secondary antibodies and DAB substrate
- HGARP-transfected HEK-293 cells for Western blot
- HGARP-transfected 70Z/3 cells for IHC
- Not explicitly mentioned
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