NeuN-immunoreactive nuclei were counted in the hippocampal CA1 region using OPTIMAS software (version 6.5; CyberMetrics® Corporation, Phoenix, AZ, USA). Iba-1 immunoreactivity was assessed based on the intensity and pixel number of immunoreactive signals using ImageJ software (version 1.80; National Institutes of Health, Bethesda, MD, USA) as described previously [61 (link)].
Quantifying Neuronal and Microglia Responses
NeuN-immunoreactive nuclei were counted in the hippocampal CA1 region using OPTIMAS software (version 6.5; CyberMetrics® Corporation, Phoenix, AZ, USA). Iba-1 immunoreactivity was assessed based on the intensity and pixel number of immunoreactive signals using ImageJ software (version 1.80; National Institutes of Health, Bethesda, MD, USA) as described previously [61 (link)].
Corresponding Organization : Seoul National University
Other organizations : Konkuk University, Hallym University, Chungnam National University, Hoseo University
Variable analysis
- Ischemia
- NeuN-immunoreactive nuclei in the hippocampal CA1 region
- Iba-1 immunoreactivity (intensity and pixel number)
- Time after ischemia (4 days)
- Brain region (between 2.0 and 2.7 mm caudal to the bregma)
- Tissue preparation (cryo-freezing and coronal sectioning at 30 μm thickness)
- Positive control: Mature neurons and microglia were visualized by immunohistochemical staining for NeuN and Iba-1, respectively.
- Negative control: Not explicitly mentioned.
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