Immunohistochemistry, Image Analysis and Laser Scanning Confocal Microscopy was performed as previously described [50 (link)].
Analysis of CDK5 and pTau and pCRMP2 and pDCX was performed as previously described [119 (link)] by double labeling. For this purpose, coverslips or brain sections were incubated with a rabbit polyclonal primary antibody against p-Tau or p-CRMP2 detected with FITC-conjugated secondary antibodies [1:75, Vector Laboratories] and CDK5 or pDCX detected with Tyramide Red. All sections were processed under the same standardized conditions. The immunolabeled blind-coded sections were serially imaged with a laser scanning confocal microscope [MRC-1024; Bio-Rad] and analyzed with Image J v1.43 software [NIH, Bethesda, MD], as previously described [162 (link)]. For each case, a total of three sections were analyzed and four fields were examined. Results were expressed as percent of cells displaying CDK5 in the nucleus or levels of pixel intensity.