Amino acids were extracted and measured as described previously (Huo et al., 2020b (link)). Briefly, 200 mg of frozen leaf samples were extracted in 2 ml 50% ethanol (including 0.1 M HCl) and centrifuged at 13,000 g for 10 min. The supernatant was added to methanol at a final volume of 10 ml. The samples were filtered through a 0.22 μm filter to analyze the metabolites with a liquid chromatography-mass spectrometry system (QTRAP5500; SCIEX, Concord, ONT, Canada) equipped with an Inertsil ODS-4 C18 column (4.6 × 250 mm, 5 μm) at a flow rate of 0.3 ml/min. The solvent system consisted of water containing 0.1% (v/v) formic acid (A) and acetonitrile (B). Data were quantified by comparing the peak surface areas with those obtained using standard amino acids (Sigma-Aldrich, St. Louis, MO, United States).
Metabolite Profiling of Plant Leaves
Amino acids were extracted and measured as described previously (Huo et al., 2020b (link)). Briefly, 200 mg of frozen leaf samples were extracted in 2 ml 50% ethanol (including 0.1 M HCl) and centrifuged at 13,000 g for 10 min. The supernatant was added to methanol at a final volume of 10 ml. The samples were filtered through a 0.22 μm filter to analyze the metabolites with a liquid chromatography-mass spectrometry system (QTRAP5500; SCIEX, Concord, ONT, Canada) equipped with an Inertsil ODS-4 C18 column (4.6 × 250 mm, 5 μm) at a flow rate of 0.3 ml/min. The solvent system consisted of water containing 0.1% (v/v) formic acid (A) and acetonitrile (B). Data were quantified by comparing the peak surface areas with those obtained using standard amino acids (Sigma-Aldrich, St. Louis, MO, United States).
Corresponding Organization :
Other organizations : Northwest A&F University
Variable analysis
- Soluble sugars extraction and derivatization method
- Amino acid extraction and measurement method
- Soluble sugar metabolite levels
- Amino acid metabolite levels
- Leaf sample size (200 mg)
- Extraction solvents (50% ethanol with 0.1 M HCl, methanol)
- Centrifugation speed and duration (13,000 g for 10 min)
- Filtration through 0.22 μm filter
- Liquid chromatography-mass spectrometry system (QTRAP5500; SCIEX, Concord, ONT, Canada) with Inertsil ODS-4 C18 column (4.6 × 250 mm, 5 μm) and flow rate of 0.3 ml/min
- Solvent system (water containing 0.1% (v/v) formic acid and acetonitrile)
- Standard amino acids (Sigma-Aldrich, St. Louis, MO, United States) used for quantification
Annotations
Based on most similar protocols
As authors may omit details in methods from publication, our AI will look for missing critical information across the 5 most similar protocols.
About PubCompare
Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.
We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.
However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.
Ready to get started?
Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required
Revolutionizing how scientists
search and build protocols!