Fluorescent In Situ Hybridization for miR-325-3p
Corresponding Organization :
Other organizations : Xiangya Hospital Central South University, Central South University
Variable analysis
- MiR-325-3p-biotin probe
- Relative miR-325-3p positive cell ratio
- Decalcification
- Cryo-cross-sectioned sections
- Proteinase K treatment
- Prehybridization
- Washing with 2 × SSC, 1 × SSC, and 0.5 × SSC
- Blocking with 3% BSA in 0.1% PBST
- Cy3-conjugated streptavidin incubation
- DAPI labeling of cell nucleus
- No positive or negative controls were explicitly mentioned in the provided information.
Annotations
Based on most similar protocols
- Incubation of tissue sections/cells with Proteinase K (10-20 μg/ml) for 15-20 min to enhance probe penetration (Protocol 2, 3, 4)
- Pretreatment with 4% paraformaldehyde fixation for 10-30 min to preserve tissue morphology (Protocol 1, 3, 4, 5)
- Inclusion of a negative control probe or probe without the target sequence to ensure specificity (Protocol 1, 2)
- Use of DAPI or other nuclear counterstaining to validate cellular localization of the miRNA signal (Input protocol, Protocol 1, 2, 3, 4, 5)
- Sensitivity: Use of the more sensitive Cy3-conjugated streptavidin detection (Input protocol, Protocol 1) vs. digoxigenin-labeled antibody detection (Protocol 2, 4)
- Specificity: Protocols using custom-designed miRNA probes (Input protocol, Protocol 1, 2, 4, 5) vs. commercially available probes (Protocol 3)
- Practicality: Frozen section-based protocols (Input protocol, Protocol 1, 4) vs. paraffin-embedded tissue-based protocols (Protocol 2, 3, 5)
- Inclusion of RNase-free conditions and DEPC-treated solutions to prevent RNA degradation (Protocol 4, 5)
- Optimization of hybridization temperature (37-62°C) and duration (overnight) for specific miRNA probes (Input protocol, Protocols 1-5)
- Precise miRNA probe sequence and concentration used (Input protocol, Protocols 1-5)
- Details on tissue processing, such as fixation, dehydration, and sectioning thickness (Input protocol, Protocols 1-5)
- Incubation times and temperatures for each step, such as proteinase K treatment, hybridization, and antibody/streptavidin incubation (Input protocol, Protocols 1-5)
As authors may omit details in methods from publication, our AI will look for missing critical information across the 5 most similar protocols.
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