CEMiTool for Leishmania RNA-seq Analysis

The CEMiTool package is available at Bioconductor (DOI: https://doi.org/10.18129/B9.bioc.CEMiTool) and can be downloaded using the command biocLite (“CEMiTool”) (package BiocInstaller v. > = 1.28.0). A Docker image with an environment specifically tailored for CEMiTool analyses is also available at DockerHub (https://hub.docker.com/r/csblusp/cemitool/). RNA-seq data of Leishmania-infected patients have been deposited in the ArrayExpress database at EMBL-EBI under accession number E-MTAB-6137 (https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6137/).

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Russo P.S., Ferreira G.R., Cardozo L.E., Bürger M.C., Arias-Carrasco R., Maruyama S.R., Hirata T.D., Lima D.S., Passos F.M., Fukutani K.F., Lever M., Silva J.S., Maracaja-Coutinho V, & Nakaya H.I. (2018). CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses. BMC Bioinformatics, 19, 56.

Publication 2018

Leishmania Patients Rna seq

Corresponding Organization :

Other organizations : Universidade de São Paulo, Advanced Center for Chronic Diseases, University of Chile

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