Table S3.
Quantification of Viral RNA by qPCR
Corresponding Organization : German Center for Infection Research
Other organizations : Public Health Agency of Sweden, Karolinska Institutet
Variable analysis
- RNA extraction method (RNeasy, QIAGEN)
- Reverse transcription kit (PrimeScript RT Reagent Kit with gDNA Eraser, Takara)
- Primer mix used for reverse transcription (included in the PrimeScript RT Reagent Kit)
- CDNA amount used as template for amplification (10 ng for GAPDH, LRP1, and VSV; 2 ng for RRN18S)
- Primer sets used for amplification (QuantiTect primers for GAPDH and LRP1, specific primers for VSR, and specific primers and TaqMan probes for EMCV, LACV, RVFV, SARS-CoV-2, and SFSV)
- Levels of mRNA for GAPDH, LRP1, and RRN18S
- Levels of viral RNA for EMCV, LACV, RVFV, SARS-CoV-2, and SFSV
- PCR instrument (StepOne Plus, Applied Biosystems)
- PCR kits (SYBR Premix Ex Taq (Tli RNaseH Plus) and Premix Ex Taq (probe qPCR), Takara)
- No positive controls were explicitly mentioned.
- No negative controls were explicitly mentioned.
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