Reflections were integrated and processed using iMOSFLM29 . Data were scaled and merged using SCALA30 (link). Structures were solved by the method of molecular replacement as implemented in program MOLREP12 (link) using the 2.4 Å structure of azurin C112D (PDBID: 1AG0) as a search model. The MOLREP output was then used for model building with ARP/wARP31 (link), with a single coordinate randomization included to alleviate any possible model bias. Maximum likelihood restrained refinement was carried out using program REFMAC512 (link).
Structural Determination of Copper Azurin
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Corresponding Organization :
Other organizations : California Institute of Technology, Stanford University, Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory
Protocol cited in 7 other protocols
Variable analysis
- Protein crystallization conditions (e.g., 30% ethylene glycol, 25% PEG 4000, 100 mM lithium nitrate, 10 mM copper sulfate, 100 mM tris pH 7.0)
- Protein crystal structure
- Incubation of crystals in cryoprotectant solution
- Exposure of crystals to 100 K nitrogen cryostream
- Use of 1.54 Å X-rays generated by a Rigaku rotating anode source
- Data collection using a Rigaku Raxis IV++ detector
- Data processing using iMOSFLM, SCALA, MOLREP, ARP/wARP, and REFMAC5
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