Norovirus VLP Production and Characterization
Corresponding Organization :
Other organizations : University of North Carolina at Chapel Hill, HOPE Clinic, Emory University, Bowie State University
Variable analysis
- Dilution of stool sample to approximately 10% with phosphate-buffered saline
- Centrifugation at 3,000 × g for 10 minutes
- RNA extraction from 250 μl of the clarified supernatant using 750 μl of TRIzol LS
- RNA extraction using a QIAamp Viral RNA Mini kit
- CDNA synthesis using 10 μl of RNA and a Superscript II RT kit
- Digestion of cDNA with 0.01 μg of RNase (DNase free)
- Purification of cDNA with a QIAquick PCR purification kit
- Amplification of cDNA by PCR using primers targeting the 5-prime and 3-prime ends of ORF2
- Cloning of amplicons into Tope XL
- Selection and sequencing of 12 colonies
- Synthesis of capsid genes by Bio-Basic, Inc.
- Expression of VLPs in baby hamster kidney cells (ATCC CCL-10) from Venezuelan equine encephalitis virus replicons expressing norovirus open reading frame 2 (NoV ORF2)
- Sequence of the 12 clones, with GII.4 MC4 representing the consensus sequence and MC12 representing the strain with the most divergent sequence
- Particle integrity confirmed by electron microscopy visualization of negative-stained particles of ∼40 nm
- Not explicitly mentioned
- Positive control: Not specified
- Negative control: Not specified
Annotations
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