Chromatin Immunoprecipitation (ChIP) Assay
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Corresponding Organization : University of Kentucky
Other organizations : Discovery Institute, Sanford Burnham Prebys Medical Discovery Institute, Hospital Universitario Virgen del Rocío, Instituto de Biomedicina de Sevilla, Universidad de Sevilla, St. Jude Children's Research Hospital
Variable analysis
- Antibodies used for immunoprecipitation: H3K4me3 (ab8580; Abcam) and normal rabbit IgG (ab171870; Abcam)
- ChIP-qPCR with specific Prdm1 PCR primers
- DNA enrichment over the input control
- Cell number: ~10^7 cells
- Formaldehyde concentration: 1%
- Formaldehyde cross-linking time: 10 min
- Glycine quenching time: 5 min
- Cell pelleting: 1,200 × g for 5 min at 4°C
- Sonication conditions
- Immunoprecipitation with protein A Dynabeads
- ChIP DNA purification using Qiagen MinElute PCR Purification columns
- SYBR green-based quantitative PCR using BIO-RAD CFX96™ Real-Time PCR Detection System
- Positive control: H3K4me3 antibody
- Negative control: Normal rabbit IgG
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