RDC data were used for an orthogonal validation of generated conformational ensembles and were not used as restraints. For every structure in the ensemble, a single value decomposition (SVD) analysis was utilized to calculate the alignment tensor and the Q-factor, which measures a quality value if a correlation exists between the experimental and back-calculated RDC values [28 (link)].
Anisotropic NMR Data Acquisition and Validation
RDC data were used for an orthogonal validation of generated conformational ensembles and were not used as restraints. For every structure in the ensemble, a single value decomposition (SVD) analysis was utilized to calculate the alignment tensor and the Q-factor, which measures a quality value if a correlation exists between the experimental and back-calculated RDC values [28 (link)].
Corresponding Organization : University of California, San Francisco
Other organizations : Merck & Co., Inc., Rahway, NJ, USA (United States)
Variable analysis
- Stretched gel methodology for RDC measurements
- One-bond 1H-15N and 1H-13C coupling constants in isotropic and anisotropic (stretched gel) environments
- Alignment tensor and Q-factor calculated from the RDC data
- Bruker 500 MHz Avance IIIHD instrument equipped with a 5mm CPP TCI cryoprobe
- Only backbone (NH and Cα H) RDCs were used for validation
- RDC data were not used as restraints, but for orthogonal validation of generated conformational ensembles
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