CRISPR Target Sequence Analysis Protocol
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Corresponding Organization :
Other organizations : Peking University
Protocol cited in 36 other protocols
Variable analysis
- Genomic DNA extraction method (genome DNA extraction kit from Tiangen)
- Genomic region surrounding the CRISPR target site
- Presence of heteroduplex formation after re-annealing
- SURVEYOR nuclease activity
- Relative band intensity on polyacrylamide gels
- Cell type (HEK293T cells or zebrafish embryos at 50 hpf)
- Incubation conditions (65 °C for 15 min and 95 °C for 10 min)
- Re-annealing process (95 °C for 10 min, 95 °C to 85 °C ramping at 2 °C/s, 85 °C to 25 °C at 0.3 °C/s and holding at 25 °C for 1 min)
- SURVEYOR nuclease and SURVEYOR enhancer S treatment
- Polyacrylamide gel electrophoresis and imaging
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