YOYO-3 (Thermo Fisher Scientific, Y3606) was used for nucleic acid staining of VV.13 (link),44 VV was incubated with 1 μM YOYO-3 at room temperature for 20 min. The sample was then centrifuged at 20,000 × g for 10 min. The viral pellet was washed three times in PBS as described in section 4.1. Final virus pellets were either resuspended in PBS to a concentration of 5.3 × 105 virus particles (VG)/μL and further modified to form PCVV, or 2.6 × 105 VG/μL as the naked form.44 Stained VV virions further modified to PCVV were coated and purified as detailed in section 4.1, and resuspended at a final concentration of 2.6 × 105 VG/μL. An Attune NxT cytometer (Invitrogen) was adapted to record FSC and SSC through the violet channel using the Attune NxT No-Wash No-Lyse filter kit (Thermo Fisher Scientific, 100022776). VV populations were gated for positive YOYO-3 staining. Analysis was performed using FlowJo v10.6.1 software. FITC-PCVV-YOYO-3 and VV-YOYO-3 were gated for positive YOYO-3 and FITC staining.
Flow Cytometric Analysis of Coated Vaccinia Virus
YOYO-3 (Thermo Fisher Scientific, Y3606) was used for nucleic acid staining of VV.13 (link),44 VV was incubated with 1 μM YOYO-3 at room temperature for 20 min. The sample was then centrifuged at 20,000 × g for 10 min. The viral pellet was washed three times in PBS as described in section 4.1. Final virus pellets were either resuspended in PBS to a concentration of 5.3 × 105 virus particles (VG)/μL and further modified to form PCVV, or 2.6 × 105 VG/μL as the naked form.44 Stained VV virions further modified to PCVV were coated and purified as detailed in section 4.1, and resuspended at a final concentration of 2.6 × 105 VG/μL. An Attune NxT cytometer (Invitrogen) was adapted to record FSC and SSC through the violet channel using the Attune NxT No-Wash No-Lyse filter kit (Thermo Fisher Scientific, 100022776). VV populations were gated for positive YOYO-3 staining. Analysis was performed using FlowJo v10.6.1 software. FITC-PCVV-YOYO-3 and VV-YOYO-3 were gated for positive YOYO-3 and FITC staining.
Corresponding Organization : University of Oxford
Other organizations : Institut Químic de Sarrià, Universitat Ramon Llull
Variable analysis
- Coating of VV with Chol-PEG(10K)-FITC (to form FITC-PCVV)
- Flow virometry of VV coated with Chol-PEG(10K)-FITC (FITC-PCVV)
- YOYO-3 staining of VV
- FITC and YOYO-3 staining of FITC-PCVV and VV
- Incubation time of VV with YOYO-3 (20 min)
- Centrifugation conditions (20,000 × g for 10 min)
- Washing steps of viral pellet (3 times in PBS)
- Final virus pellet concentrations (5.3 × 10^5 VG/μL for PCVV, 2.6 × 10^5 VG/μL for naked VV)
- Positive control: Not mentioned
- Negative control: Not mentioned
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