Single-nucleus RNA-seq of tissue samples
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Corresponding Organization : Hôpital Européen
Other organizations : Hôpital Robert-Debré, University of Pittsburgh, Université Libre de Bruxelles, Erasmus Hospital, Fondation Jean Dausset-CEPH, Centre National de Recherche en Génomique Humaine, Commissariat à l'Énergie Atomique et aux Énergies Alternatives, Université Paris-Saclay, Institut Gustave Roussy, Bicêtre Hospital, Hôpital Necker-Enfants Malades, Université Paris Sciences et Lettres, Institut Curie, Hôpital Fontmaure, Centre Hospitalier Universitaire de Besançon
Variable analysis
- Tissue sample type
- Single-nucleus RNA-seq data
- Lysis buffer workflow
- Tissue sample size (approximately 35 mg)
- Tissue homogenization (25 times with pestle A and 25 times with pestle B)
- Incubation time (5 min)
- Centrifugation conditions (500 g for 5 min at 4 °C)
- Nuclei washing and resuspension buffers
- Nuclei filtration (70 μm and 30 μm)
- Nuclei concentration (1,000 nuclei per μL)
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