Genome-wide CRISPR Screen for T-ALL Survival Genes
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Corresponding Organization : St. Jude Children's Research Hospital
Other organizations : University of Pennsylvania
Variable analysis
- Genome-wide CRISPR/Cas9 screen
- Genes essential for T-ALL survival
- KOPT-K1 cell line used as the model system
- Cas9-expressing KOPT-K1 cells generated by lentiviral transduction
- Single cell dilution performed to develop and select clones with high level of Cas9
- Cas9-expressing KOPT-K1 cells transfected with the GeCKO V2 sgRNA library at low multiplicity of infection (0.3)
- Transfected cells selected with puromycin for two days and then cultured for another 6 days to allow proliferation
- Genomic DNA extracted from surviving cells and sgRNAs amplified by PCR followed by Illumina sequencing
- Not explicitly mentioned
- Not explicitly mentioned
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