Following primary antibodies were used: rabbit anti-brevican “neo” (Rb399) (custom-made; rat neo-epitope QEAVESE; see Valenzuela et al., 2014 (link); 1:500), polyclonal sheep anti-human/rat brevican (AF4009, R&D Systems, Minneapolis, United States, 1:1000), polyclonal sheep anti-rat/mouse neurocan (AF5800, R&D Systems, Minneapolis, United States, 1:1000), and the antibodies from the ELISA kits (see above).
To prove if the neo-antibody, which was originally produced against the neo-epitope of the rat N-terminal brevican fragment, is also detecting the human brevican fragment neo-epitope EATESE we performed a competition assay with pre-incubation of the primary antibody with a 100-fold molar excess of the peptide Biotin-Ahx-CGQEAVESE containing the immunogen for 1 h at RT. As shown in Supplementary Figure 1, the 60 kDa band detected by this antibody in human CSF samples is clearly diminished in the peptide competition condition, demonstrating its specificity.
As secondary antibodies we used peroxidase-conjugated AffiniPure donkey anti-rabbit IgG (H + L) and peroxidase-conjugated AffiniPure donkey anti-sheep IgG (H + L) (Jackson ImmunoResearch, Cambridgeshire, United Kingdom, 1:2000).
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