To diagnose the hormone precursor-to-product ion transitions, mixtures of 150 ng/mL of the standard compounds dissolved in 50% MeCN were directly infused into a hybrid triple quadrupole/linear ion trap mass spectrometer (ABI 4000 Q-Trap, Applied Biosystems, Foster City, CA, USA) outfitted with an electrospray ion source. The analysis parameters were optimized for the production of characteristic precursor-to-product ion transitions in negative or positive ionization modes. ABA, IAA, IAA-Asp, JA, JA-Ile, SA, sakuranetin, naringenin, and their internal standards were scanned in the negative mode, whereas momilactone A and MeJA were analyzed in the positive mode. The mixtures of standard compounds were separated by reversed-phase UFLC and analyzed by ESI-MS/MS in the MRM mode with 50 ms dwell time, 5 ms of pause time between mass ranges, and 700 ms of settle time for switching polarities. The identities of phytohormones and metabolites in the crude plant extracts were confirmed by analysis of product ion fragments obtained by the hybrid triple quadrupole/linear ion trap mass spectrometer, operating in the IDA mode, with a source voltage of 4.5 kV and source temperature of 550. In the ''Enhanced Product Ion" scan mode, precursor ions were fragmented with collision energy +25 kV or -25 kV and products in the range of 50 to 500 m/z were detected.
UFLC-ESI-MS/MS assays were repeated twice biologically, with each repetition having three replicates. Similar results were obtained in repeated experiments; only the result in one repetition was presented.