To get a better contrast, the fluorescent images were changed to grayscale mode and placed against a white background using imaging software (Photoshop; Adobe Systems, Inc., Mountain View, CA, USA). The subbasal nerve fibers in each image were carefully drawn with 4-pixel lines following the course of each fiber by using the brush tool in the imaging software (Adobe Systems, Inc.). The nerve area and the total area of the image were obtained by using the histogram tool. The percentage of total nerve area was quantified for each image as described previously.25 (link)
To examine the relative content of neuropeptides in the subbasal nerves, 12 corneas that had been stained with anti-βIII-tubulin were double-stained with CGRP or SP. For each neuropeptide, a total of 24 whole-mount images from the central zone (one image/quadrant) were taken, and then the same numbers of images were taken for βIII-tubulin. In the same visual field, the percentage of βIII-tubulin equaled that of the total nerve area, and the ratio of the peptide-positive nerve area against βIII-tubulin represented the relative content.
To calculate CGRP- and SP-positive neurons in the TG, 20 images were selected randomly from 10 mice (1 section/ganglion) and counted in a blind fashion. Differences in central and peripheral corneal nerve densities, terminal numbers, and the relative content of neuropeptides in the central cornea and TG were expressed as means ± SEM and t-test was performed; P < 0.05 was considered a statistically significant difference between two groups.