Total RNA was purified from cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions. One-step real-time RT-PCR was performed with 100 ng of total RNA using a One-step RT-PCR kit (TaKaRa) on a Step-One Plus Real-Time PCR System (Thermo Fisher Scientific) using the primers 5′-CCGTCTGTGCCTTCTCATCT and 5′-TAATCTCCTCCCCCAACTCC to detect HBV RNA levels. RT-PCR was performed with the following parameters for 40 cycles: 95 °C for 30 s, 55 °C for 30 s, and 72 °C for 30 s.
Quantification of HBV DNA and RNA
Total RNA was purified from cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions. One-step real-time RT-PCR was performed with 100 ng of total RNA using a One-step RT-PCR kit (TaKaRa) on a Step-One Plus Real-Time PCR System (Thermo Fisher Scientific) using the primers 5′-CCGTCTGTGCCTTCTCATCT and 5′-TAATCTCCTCCCCCAACTCC to detect HBV RNA levels. RT-PCR was performed with the following parameters for 40 cycles: 95 °C for 30 s, 55 °C for 30 s, and 72 °C for 30 s.
Corresponding Organization :
Other organizations : Jinzhou Medical University, Hubei University of Medicine, Taihe Hospital
Variable analysis
- Extraction method (TIAN amp Virus DNA/RNA Kit for extracellular DNA, and a previous study method [20] for intracellular DNA)
- Extracellular HBV virions quantified by real-time PCR
- HBV replication intermediates in cells quantified by real-time PCR
- HBV RNA levels quantified by one-step real-time RT-PCR
- Reaction parameters for real-time PCR (95°C for 5s, 60°C for 30s for 40 cycles)
- Reaction parameters for one-step real-time RT-PCR (95°C for 30s, 55°C for 30s, 72°C for 30s for 40 cycles)
- No positive or negative controls were explicitly mentioned in the protocol.
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