Cryo-EM Structural Analysis of Trimer-43A2 Fab Complex
Corresponding Organization : Ragon Institute of MGH, MIT and Harvard
Other organizations : University College London, University of Amsterdam, Amsterdam University Medical Centers
Variable analysis
- Incubation of Trimer (500 μg) with 10-fold molar excess of 43A2 Fab overnight
- Resolution of the final 3D reconstruction of the complex at ~3.52 Å
- Purification of the complex over Superose 6 column (GE Healthcare)
- Concentration of the complex to 1.5 mg/ml
- Mixing the complex with Lauryl Maltose Neopentyl Glycol (Anatrace) before deposition onto 2/2 Quantifoil grids (EMS)
- Glow-discharging the grids for 10 s before deposition
- Deposition of the sample using Vitrobot (Thermo Fisher Scientific)
- Blotting and plunging the grids into liquid ethane using the Vitrobot to immobilize the particles in vitreous ice
- Data collection using Leginon image acquisition software on a Titan Krios set to 300 kV with a Gatan K2 summit detector in counting mode
- Data processing using MotionCor2 for frame alignment and GCTF for CTF model determination
- Particle picking using DoG Picker and 2D classification in cryoSPARC
- 3D homogeneous refinement using C3 symmetry
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