CRISPR arrays were used from published studies or CRISPRdb. They were also predicted with CRISPRFinder, PILER-CR or CRT using the default parameters. The current tools for prediction have some limitations, notably, the lack of prediction of the transcribed strand, the imprecise definition of the DR/Spacer junctions or splitting into several sub arrays.
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CRISPR Array Prediction Limitations
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Crispr arrays
Corresponding Organization :
Other organizations : University of Otago, Wageningen University & Research
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Variable analysis
independent variables
- CRISPR arrays used from published studies or CRISPRdb
- CRISPR arrays predicted with CRISPRFinder, PILER-CR or CRT using the default parameters
- Limitations of current tools for prediction, notably, the lack of prediction of the transcribed strand, the imprecise definition of the DR/Spacer junctions or splitting into several sub arrays
- Default parameters used for CRISPRFinder, PILER-CR or CRT
- No positive or negative controls were explicitly mentioned.
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