Genome Resequencing of Heliconius Butterflies

Whole-genome resequencing data available for the melpomene clade from previously published work were also included [30 (link),39 (link),42 (link),44 (link),45 (link),51 (link),70 (link)–72 (link)]. For a few additional samples, 100 to 150 bp paired-end whole-genome resequencing data were generated on an Illumina X Ten platform (Novogene Co. Ltd, China; S1 Table). In addition, we downloaded, processed, and analysed a publicily available data set for H. cydno galanthus [49 (link)] with a more moderate depth of coverage (for results see S14 Fig). For the erato clade already published, whole-genome-resequencing data were used [38 (link)] (S10 Table).
The whole-genome data were mainly used for demographic reconstructions, whereas, for other analyses, the regions matching the capture regions were used.

Free full text: Click here

Moest M., Van Belleghem S.M., James J.E., Salazar C., Martin S.H., Barker S.L., Moreira G.R., Mérot C., Joron M., Nadeau N.J., Steiner F.M, & Jiggins C.D. (2020). Selective sweeps on novel and introgressed variation shape mimicry loci in a butterfly adaptive radiation. PLoS Biology, 18(2), e3000597.

Publication 2020

Illumina X Ten platform

Bp 100 Galanthus Genome Reconstructions

Corresponding Organization : University of Cambridge

Other organizations : University of Puerto Rico at Río Piedras, University of Arizona, Universidad del Rosario, University of Edinburgh, Universidade Federal do Rio Grande do Sul, Université Laval, Université de Montpellier, Centre National de la Recherche Scientifique, École Pratique des Hautes Études, Université Paul-Valéry Montpellier, Centre d'Écologie Fonctionnelle et Évolutive, University of Sheffield

Top 5 similar protocols

Variable analysis

independent variables

Whole-genome resequencing data available for the melpomene clade from previously published work
100 to 150 bp paired-end whole-genome resequencing data generated on an Illumina X Ten platform for a few additional samples
Publicly available data set for H. cydno galanthus

dependent variables

Demographic reconstructions
Other analyses using the regions matching the capture regions

control variables

None explicitly mentioned

controls

No positive or negative controls specified

Annotations

Based on most similar protocols

Etiam vel ipsum. Morbi facilisis vestibulum nisl. Praesent cursus laoreet felis. Integer adipiscing pretium orci. Nulla facilisi. Quisque posuere bibendum purus. Nulla quam mauris, cursus eget, convallis ac, molestie non, enim. Aliquam congue. Quisque sagittis nonummy sapien. Proin molestie sem vitae urna. Maecenas lorem.

As authors may omit details in methods from publication, our AI will look for missing critical information across the 5 most similar protocols.

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Revolutionizing how scientists
search and build protocols!