Quantitative gene expression analysis in moss
Partial Protocol Preview
This section provides a glimpse into the protocol.
The remaining content is hidden due to licensing restrictions, but the full text is available at the following link:
Access Free Full Text.
Corresponding Organization : University of Freiburg
Other organizations : Southern Illinois University Carbondale
Variable analysis
- Juvenile vs. adult apices
- Gd vs. Re adult apices
- Gene expression
- CDNA synthesis using Superscript III (SSIII) kit with 1/2 the recommended amount of SSIII
- Primer design with an annealing temperature around 60°C and product length of ~300 bp
- Validation of single genomic locus binding properties using BLAST against the P. patens V3.3 genome
- Real-time PCR using 5 ng of cDNA as input with OneTaq from New England Biolabs
- Visualization of PCR products via gel electrophoresis using peqGREEN
- Use of 100 bp ladder (NEB) as size standard
- Real-time qPCR with two (juvenile vs. adult) or three (ccdc39 expression) biological replicates
- Use of act5 (Pp3c10_17070V3.1) as reference gene due to homogenous expression in juvenile and adult apices in Gd and Re
Annotations
Based on most similar protocols
As authors may omit details in methods from publication, our AI will look for missing critical information across the 5 most similar protocols.
About PubCompare
Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.
We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.
However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.
Ready to get started?
Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required
Revolutionizing how scientists
search and build protocols!