Three-dimensional differentiation of hESCs and hiPSCs into cortical spheroids was performed as described previously43 (link). Briefly, confluent, undifferentiated colonies of hESCs were removed from MEFs using collagenase. Colonies were washed once with media and suspended in hESC media without FGF2, supplemented with 10 μm Y-27632 and plated into 6-well low attachment plates (Corning: 3471). On days 1-5, media was changed to hESC-FGF2 media, supplemented with 10 μm Dorsomorphin (Abcam: ab146597) and 10 μm SB431542. On day 6, developing spheroids were put into neural induction media composed of Neurobasal-A (ThermoFisher: 10888022), B-27 Supplement–A (ThermoFisher: 12587-010), PenStrep, and Glutamax, supplemented with 20 ng/ml FGF and 20 ng/ml EGF. Media was changed in this manner every day from days 6-15 and then every other day until day 25. From days 25-43, the developing spheroids were grown in neural induction media supplemented with 20 ng/ml BDNF and 20 ng/ml NT-3, with media changes every 4 days. From day 43 on, spheroids were maintained in neural induction media without BDNF or NT-3, with media changes every 4 days until harvest.