Characterizing Hepatitis A Virus Replication
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Corresponding Organization : University of North Carolina at Chapel Hill
Other organizations : Seoul National University Bundang Hospital, Nationwide Children's Hospital, The Ohio State University, Texas Biomedical Research Institute
Protocol cited in 33 other protocols
Variable analysis
- Propagation of HM175/p16 HAV in Huh-7.5 cells
- Use of pHM175/18f, a molecular clone of a related cytopathic variant
- Iodixanol (Opti-Prep) gradient centrifugation at 141,000 × g for 48 hrs at 4 °C
- Transfection of cells with SmartPool siRNAs (Dharmacon)
- Electroporation of mutant and wild-type viral RNAs
- Incubation of cells with eHAV for 1 hr at 37 °C
- Incubation of virus with antibodies for 1 hr at 37 °C
- Viral RNA levels measured by qRT-PCR
- Viral infectivity quantified by infrared fluorescence immunofocus assay (IR-FIFA)
- VP2-ALIX interactions analyzed by immunoprecipitation and qRT-PCR
- Intra- and extracellular HAV RNA levels quantified at 48–72 hrs
- Cell culture conditions (Huh-7.5 cells)
- Centrifugation parameters (141,000 × g, 48 hrs, 4 °C)
- Time points for sample collection (48–72 hrs)
- Positive control: Not explicitly mentioned
- Negative control: Not explicitly mentioned
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