P. putida KT2440 and the evolved strain KT40AE were grown in lysogeny broth (LB) at 30°C with shaking at 250 rpm. Growth was monitored with a Shimadzu UV‐260 spectrophotometer at 600 nm (OD600). Solid media were prepared with agar at 1.5% (w/v). The B. bacteriovorus HD100 strain was routinely grown in coculture in Hepes buffer (25 mM Hepes amended with 2 mM CaCl2·2H2O and 3 mM MgCl2·3H2O, pH 7.8) or DNB liquid medium (consisting of 0.8 g l−1 NB supplemented with 2 mM CaCl2 and 3 mM MgCl2), with P. putida KT2440 as prey, as previously described (Martínez et al., 2016 (link)). Prey cultures were prepared from cells grown in NB for 16 h and diluted to OD600 of 1 in Hepes buffer. After predation, the cocultures were filtered twice through a 0.45‐μm filter (Sartorius) and the B. bacteriovorus cells were centrifuged at 14 000 g, 4°C, 15 min. This pellet was subsequently suspended in 1–2 ml of MOPS buffer and used in the encapsulation protocol.
Cultivating Predatory Bacteria Bdellovibrio
P. putida KT2440 and the evolved strain KT40AE were grown in lysogeny broth (LB) at 30°C with shaking at 250 rpm. Growth was monitored with a Shimadzu UV‐260 spectrophotometer at 600 nm (OD600). Solid media were prepared with agar at 1.5% (w/v). The B. bacteriovorus HD100 strain was routinely grown in coculture in Hepes buffer (25 mM Hepes amended with 2 mM CaCl2·2H2O and 3 mM MgCl2·3H2O, pH 7.8) or DNB liquid medium (consisting of 0.8 g l−1 NB supplemented with 2 mM CaCl2 and 3 mM MgCl2), with P. putida KT2440 as prey, as previously described (Martínez et al., 2016 (link)). Prey cultures were prepared from cells grown in NB for 16 h and diluted to OD600 of 1 in Hepes buffer. After predation, the cocultures were filtered twice through a 0.45‐μm filter (Sartorius) and the B. bacteriovorus cells were centrifuged at 14 000 g, 4°C, 15 min. This pellet was subsequently suspended in 1–2 ml of MOPS buffer and used in the encapsulation protocol.
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Corresponding Organization : Consejo Superior de Investigaciones Científicas
Variable analysis
- Growth media (LB, Hepes buffer, DNB liquid medium)
- Presence of prey organism P. putida KT2440
- Growth rate of P. putida KT2440 and KT40AE strains (measured by OD600)
- Predation of P. putida KT2440 by B. bacteriovorus HD100
- Temperature (30°C)
- Shaking speed (250 rpm)
- PH of Hepes buffer (7.8)
- Concentrations of CaCl2 and MgCl2 in Hepes buffer and DNB liquid medium
- P. putida KT2440 as prey for B. bacteriovorus HD100
- Not explicitly mentioned
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