13C-labeling analysis was performed by the protocol reported before with a slight modification [59 (link)]. 15 ml cells of the later exponential phase at the OD600 of 1.3 ± 0.1 were pre-cultured in minimal medium with 12C-methanol and 5 g/l 12C-labeled β-alanine, and then were rapidly passed through the membrane filter (0.22 μm, 47 mm, Sartorius). The filter was immediately removed and placed on an agar plate with 12C-methanol and 12C-labeled β-alanine for 30 min at 30 °C, then transferred to another agar plate with the same concentration of 12C methanol and 13C-labeled β-alanine for different times (i.e. 2, 5 and 12 h). Then the filter was immediately transferred to a 50 ml tube with liquid nitrogen for quenching. The sample was stored at − 80 °C freezer until it was ready for subsequent extractions. The metabolites were extracted and analyzed as the described above.
Stable Isotope Labeling Method
13C-labeling analysis was performed by the protocol reported before with a slight modification [59 (link)]. 15 ml cells of the later exponential phase at the OD600 of 1.3 ± 0.1 were pre-cultured in minimal medium with 12C-methanol and 5 g/l 12C-labeled β-alanine, and then were rapidly passed through the membrane filter (0.22 μm, 47 mm, Sartorius). The filter was immediately removed and placed on an agar plate with 12C-methanol and 12C-labeled β-alanine for 30 min at 30 °C, then transferred to another agar plate with the same concentration of 12C methanol and 13C-labeled β-alanine for different times (i.e. 2, 5 and 12 h). Then the filter was immediately transferred to a 50 ml tube with liquid nitrogen for quenching. The sample was stored at − 80 °C freezer until it was ready for subsequent extractions. The metabolites were extracted and analyzed as the described above.
Corresponding Organization : Tianjin University
Other organizations : Qingdao Agricultural University, University of Washington
Variable analysis
- Incubation time with ^{13}C-labeled β-alanine (2 h, 5 h, 12 h)
- Metabolite levels
- Cell density (OD_{600} of 1.3 ± 0.1)
- Culturing in minimal medium with ^{12}C-methanol and ^{12}C-labeled β-alanine
- Membrane filter (0.22 μm, 47 mm, Sartorius)
- Incubation temperature (30 °C)
- Quenching with liquid nitrogen
- Positive control: Cells pre-cultured in minimal medium with ^{12}C-methanol and ^{12}C-labeled β-alanine
- Negative control: Not explicitly mentioned
Annotations
Based on most similar protocols
As authors may omit details in methods from publication, our AI will look for missing critical information across the 5 most similar protocols.
About PubCompare
Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.
We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.
However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.
Ready to get started?
Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required
Revolutionizing how scientists
search and build protocols!