CRISPR/Cas9 sgRNA Design and Validation
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Corresponding Organization : German Centre for Cardiovascular Research
Variable analysis
- SgRNA target sites designed with the CRISPR/Cas9 target online predictor tool CCTop
- Replacement of sgRNA target sites on the donor with the nucleotide sequences of the loxP sites
- Induction of DSBs in the intronic 5′ and 3′ regions of the target exon
- Standard parameters for CCTop (PAM = NGG, target site length = 20 nt, core length = 12 nt, max mismatches = 4, mouse genome = GRCm38/mm10)
- Generation of sgRNA constructs and in vitro transcription according to the protocol of Stemmer et al., 2015
- Cloning of purchased sgRNA oligos into the DR274 vector via the BsaI restriction site
- Linearization of the resulting sgRNA plasmid with FastDigest DraI
- In vitro transcription of sgRNAs using the T7 MEGAshortscript Kit
- Purification of sgRNAs using the RNeasy Kit
- Quality control of sgRNA integrity by gel electrophoresis
- None specified
- None specified
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