Mass Spectrometry Glycoproteomic Protocol
Corresponding Organization : Leiden University
Other organizations : Utrecht University
Variable analysis
- Sodium borohydride
- Sodium chloride
- Dowex cation-exchange resin (50W-X8)
- Ammonium bicarbonate (ABC)
- Trifluoroacetic acid (TFA)
- Hydrochloric acid (HCl)
dl -DTT- Ethanol (Reag. Ph. Eur)
- Bovine submaxillary mucin (BSM), type I-S
- Tandem mass tag (TMT)pro label reagents
- 8 M guanidine hydrochloride
- Potassium hydroxide
- Solid phase extraction bulk sorbent carbograph
- HPLC SupraGradient acetonitrile (methyl cyanide [MeCN])
- Peptide
N -glycosidase F (PNGase F) - Complete EDTA-free protease inhibitor cocktail tablets
- Measured outcomes
- Dulbecco's PBS (DPBS)
- Dulbecco's modified Eagle's medium
- 0.25% trypsin/EDTA
- Fetal calf serum (FCS)
- 96-well PP filter plate
- MultiScreen HTS 96 multiwell plates (hydrophobic Immobilon-P polyvinylidene difluoride [PVDF] membrane)
- 96-well PP microplate
- Positive controls not explicitly mentioned
- Negative controls not explicitly mentioned
Annotations
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