Extraction and Sequencing of Gut Microbiome

Genomic DNA was extracted from the intestinal bacteria using a bacterial DNA isolation kit (Foregene, Chengdu, China) according to the manufacturer’s instructions. The extracted DNA was checked on 1% agarose gel, and DNA concentration and purity were determined with NanoDrop 2000 UV-vis spectrophotometer (Thermo Scientific, Wilmington, DE, USA). After the extraction, DNA fragments from the samples were amplified using specific primers: 338F: 5′-ACTCCTACGGGAGGCAGCAG-3′, 806R: 5′-GGACTACHVGGGTWTCTAAT-3′ [61 (link)]. The PCR product was detected using 2% agarose gel, purified using the AxyPrep DNA Gel Extraction Kit (Axygen Biosciences, Union City, CA, USA) and quantified using Quantus™ Fluorometer (Promega, Madison, WI, USA). V3–V4 amplicon library was constructed using TruSeqTM DNA Sample Prep Kit (Illumina, San Diego, CA, USA). High-throughput sequencing was performed in a paired-end model using the Illumina MiSeq PE300 platform (Illumina, San Diego, CA, USA) by Majorbio Bio-Pharm Technology Co., Ltd. (Shanghai, China).