Drosophila melanogaster were reared in cages at 25°C, unless indicated otherwise. Embryos were collected onto freshly yeasted apple juice plates overnight and staged according to Campos-Ortega and Hartenstein (1985) . For larval experiments, larvae were picked within 1 h of hatching [designated 0 h after larval hatching (ALH)], transferred to a yeasted food plate and reared to the desired stage before dissection.
The following stocks were used: w1118, GAL4c855a (Manseau et al., 1997 (link)), R9D11-mCD8-GFP (Zhu et al., 2011 (link)), R9D11-CD4-tdTomato (Han et al., 2011 (link)), (miR-7)E>GFP (Li et al., 2009 (link)), wg-LacZ (1-en-11) (Kassis et al., 1992), hhP30 (Lee et al., 1992 (link)) and HLHmγ-GFP (Almeida and Bray, 2005 (link)). The following stocks were obtained from the Bloomington Drosophila Stock Center: dpp-lacZExel.2 (#8411), UAS-myr-mRFP (#7119), R31H09-GAL4 (#49694), R29C07-GAL4 (‘ogre-GAL4’, #49340) and pnt-GFP.FPTB (#42680). To perform FLEXAMP, we crossed flies carrying yw; tub-Gal80ts, UAS-flp; act>y+>LHV2deltaRFP-86Fb (LexA) (Yagi et al., 2010 (link)) to flies carrying 13XLexAOp2-mCD8-GFP (Bloomington #32205), R31H09-GAL4 and tub-GAL80ts (Bloomington #7019).
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