Targeted Genomic Enrichment for NSHL
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Corresponding Organization : University of Iowa Hospitals and Clinics
Other organizations : Shinshu University
Variable analysis
- Modification of the solution-based Agilent SureSelect target enrichment system
- Fragmentation of 3μg of gDNA to an average size of 250 bp
- Adaptor ligation before the first amplification
- Hybridization and capture with RNA baits
- Second amplification before pooling for sequencing
- Minimal amplification (8-10 cycles for pre-hybridization PCR, 12-16 cycles for post-hybridization PCR)
- The TGE (Target Genomic Enrichment) of all exons of all genes implicated in NSHL, including NSHL mimics
- Sequencing on either an Illumina MiSeq or HiSeq system
- Pooling of barcoded and multiplexed samples (4-6 or 48 samples per pool)
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