The reduction in disulphide bonds, alkylation of cysteines, and digestion in S-Trap micro columns were performed as described in a recent article [8 (link)]. The elution of peptides, recovery of hydrophobic peptides, and measurement of peptide concentration were performed as previously described [8 (link),30 (link)]. Each sample was dried in a vacuum centrifuge and stored at −80 °C until further use.
Schirmer Strip Protein Extraction
The reduction in disulphide bonds, alkylation of cysteines, and digestion in S-Trap micro columns were performed as described in a recent article [8 (link)]. The elution of peptides, recovery of hydrophobic peptides, and measurement of peptide concentration were performed as previously described [8 (link),30 (link)]. Each sample was dried in a vacuum centrifuge and stored at −80 °C until further use.
Corresponding Organization : University of Southern Denmark
Other organizations : University of Copenhagen, Oslo University Hospital, Aalborg University Hospital, Aalborg University, Rigshospitalet, Aarhus University
Variable analysis
- Storage temperature of samples at -80 °C
- Preparation of samples (thawing, incubation in lysis buffer, S-Trap micro column digestion protocol)
- Reduction in disulfide bonds
- Alkylation of cysteines
- Peptide digestion
- Elution of peptides
- Recovery of hydrophobic peptides
- Peptide concentration
- Lysis buffer composition (5% SDS, 50 mM triethylammonium bicarbonate [TEAB])
- S-Trap micro column digestion protocol
- Reduction, alkylation, and digestion procedures
- Elution, recovery, and peptide concentration measurement methods
- Positive control: Not explicitly mentioned
- Negative control: Not explicitly mentioned
Annotations
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