Resonances were assigned by addition to the supernatants of pure compounds and comparison with data available in the literature (Carvalho et al., 2011 (link)). Concentrations were calculated from the areas of the resonances of the 1H-NMR spectra considering the TSP resonance area, and using an appropriate resonance saturation correction factor (Carvalho et al., 2011 (link)). The metabolites concentration was normalized to the OD600, measured for each condition.
Extracellular Metabolome Analysis of Spermine NONOate-Treated Cells
Resonances were assigned by addition to the supernatants of pure compounds and comparison with data available in the literature (Carvalho et al., 2011 (link)). Concentrations were calculated from the areas of the resonances of the 1H-NMR spectra considering the TSP resonance area, and using an appropriate resonance saturation correction factor (Carvalho et al., 2011 (link)). The metabolites concentration was normalized to the OD600, measured for each condition.
Corresponding Organization : Universidade Nova de Lisboa
Other organizations : University of Groningen
Protocol cited in 1 other protocol
Variable analysis
- Growth medium (galactose-CDM, glucose-CDM, nasal synthetic medium)
- Spermine NONOate treatment (250 μM or untreated control)
- Extracellular metabolite concentrations (quantified by 1H-NMR)
- Cell culture conditions (OD600 = 0.4 at harvest)
- Centrifugation (11800 ×g for 2 min)
- Filtration (0.22 μm Pall filters)
- NMR analysis conditions (Bruker AVANCE II500 MHz spectrometer, 16°C, Bruker pulse programs)
- Metabolite quantification (using TSP as an internal standard, with appropriate resonance saturation correction)
- Positive control: Untreated samples (no spermine NONOate treatment)
- Negative control: Not mentioned
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