Phylogenetic Analysis of Conserved RCC1 Proteins

Multiple alignments of the conserved RCC1 protein sequences of bread wheat, emmer wheat, and Aegilops tauschii were performed using Clustal Omega (Sievers et al., 2011 (link)
) using default parameters, and a phylogenetic tree was constructed using a maximum-likelihood method with 1,000 bootstrap replications in the RaxML_NG software (Kozlov et al., 2019 (link)
). Figtree 1.4.4 (http://tree.bio.ed.ac.uk/software/figtree/) was used to visualize and optimize the phylogenetic tree.

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An X., Zhao S., Luo X., Chen C., Liu T., Li W., Zou L, & Sun C. (2023). Genome-wide identification and expression analysis of the regulator of chromosome condensation 1 gene family in wheat (Triticum aestivum L.). Frontiers in Plant Science, 14, 1124905.

Publication 2023

Aegilops Bread Protein Replications Sequences alignments Tree Wheat

Corresponding Organization :

Other organizations : ZheJiang Academy of Agricultural Sciences, Cotton Research Institute

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Variable analysis

independent variables

None explicitly mentioned

dependent variables

Conserved RCC1 protein sequences of bread wheat, emmer wheat, and Aegilops tauschii

control variables

None explicitly mentioned

controls

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