Global Genetic Diversity Study

A total of 1002 DNA samples were used in this study comprising: i) reference samples from the HGDP-CEPH diversity panel standardized subset H952 [30] (link), [31] (link) with origin in Africa (AFR), Europe (EUR), East Asia (EAS), America (NAM) and also Oceania (OCE), representing a total 584 individuals from 40 populations. Individuals 1219, 1339, 1344 and 1041 were not included in the study since no DNA was available for analysis; in substitution of 1041 we used 1042 who had been excluded from subset H952 due to a parent/offspring relationship with 1041 [31] (link); ii) samples from Angola (48), Portugal (48), Taiwan (48) and Brazilian Amazonas tribes (48) used in a preliminary evaluation of the AIM-INDEL assay and as example testing samples; iii) samples from the city of Belém (226), an admixed population in northeastern Amazonas, Brazil.

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Pereira R., Phillips C., Pinto N., Santos C., dos Santos S.E., Amorim A., Carracedo Á, & Gusmão L. (2012). Straightforward Inference of Ancestry and Admixture Proportions through Ancestry-Informative Insertion Deletion Multiplexing. PLoS ONE, 7(1), e29684.

Publication 2012

A dna Assay Indel Tribes

Corresponding Organization : Universidade Federal do Pará

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Variable analysis

independent variables

Samples from Angola (48)
Samples from Portugal (48)
Samples from Taiwan (48)
Samples from Brazilian Amazonas tribes (48)
Samples from the city of Belém (226), an admixed population in northeastern Amazonas, Brazil

dependent variables

Not explicitly mentioned

control variables

Reference samples from the HGDP-CEPH diversity panel standardized subset H952 with origin in Africa (AFR), Europe (EUR), East Asia (EAS), America (NAM) and Oceania (OCE), representing a total 584 individuals from 40 populations

positive controls

Not explicitly mentioned

negative controls

Not explicitly mentioned

Annotations

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