Quantitative RT-PCR Methodology
Corresponding Organization : Qingdao National Laboratory for Marine Science and Technology
Other organizations : Third Affiliated Hospital of Sun Yat-sen University, University of Macau
Variable analysis
- QRT-PCR protocol as described previously (64 (link), 65 (link))
- Total RNA isolation using TRIzol (Invitrogen, USA)
- RNA quantification spectrophotometrically
- Use of 1 μg of total RNA for qRT-PCR
- Use of EvoM-MLV RT kit with gDNA clean for qPCR (AG11705; Accurate Biotechnology)
- Synthesis of cDNAs using reverse transcription kit
- QRT-PCR using 2× SYBR green premix pro Taq HS qPCR kit (AG11701; Accurate Biotechnology)
- Primer concentrations (0.2 μl of 10 μM each forward and reverse primers)
- Biological triplicates for all samples
- CFX384 Touch (Bio-Rad, USA) for qRT-PCR
- Gene expression levels measured by qRT-PCR
- Cycling parameters (95°C for 30 s, 40 cycles of 95°C for 10 s and 56°C for 30 s, fluorescence measurements at 72°C for 1 s)
- Melting curve analysis (95°C with a calefactive velocity of 5°C/s)
- Normalization of gene expression using β-actin, gapdh, and ef1α as reference genes
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