Comprehensive Metabolic Profiling Using HILIC and RPLC
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Corresponding Organization : USC Norris Comprehensive Cancer Center
Other organizations : University of Southern California, Stanford University
Variable analysis
- Separation techniques used (HILIC and RPLC)
- Ionization modes (positive and negative)
- Metabolic extracts analyzed
- Thermo Q Exactive plus mass spectrometer used for data acquisition
- HESI-II probe used
- Full MS scan mode used
- MS/MS data acquired on pool samples consisting of an equimolar mixture of all the samples in the study
- HILIC experiments performed using a ZIC-HILIC column 2.1×100 mm, 3.5μm, 200Å (Merck Millipore) and mobile phase solvents consisting of 10mM ammonium acetate in 50/50 acetonitrile/water (A) and 10 mM ammonium acetate in 95/5 acetonitrile/water (B)
- RPLC experiments performed using a Zorbax SBaq column 2.1 × 50 mm, 1.7 μm, 100Å (Agilent Technologies) and mobile phase solvents consisting of 0.06% acetic acid in water (A) and 0.06% acetic acid in methanol (B)
- Injecting 6 and 12-pool samples to equilibrate the LC-MS system prior to run the sequence for RPLC and HILIC, respectively
- Sample randomization for metabolite extraction and data acquisition
- Checking mass accuracy, retention time and peak shape of internal standards in every samples
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